Bloating, cramps, surprise weight gain, afternoon slumps, and mood swings in our forties and fifties aren’t always just about menopause. While these changes often come together, there’s one part that gets overlooked: your gut. What if those daily struggles could ease by caring for the trillions of tiny helpers living inside you?
Here at Women40Wellness, we believe you don’t have to accept discomfort as normal. In this post, you’ll learn how your gut bacteria and hormones work as allies. We’ll show you why gut health matters more than ever in perimenopause and menopause. Then we’ll share simple ways to support both so you can feel like yourself again.
In this article:
Your microbiome is the community of bacteria, fungi, and even viruses that live mostly in your gut. These tiny partners help you digest food, train your immune system, and even shape your mood. One group in this community, called the estrobolome, plays a key role in estrogen balance. These microbes produce an enzyme that recycles estrogen, helping to keep your level steady.
When your estrobolome is healthy and diverse, you feel more balanced: fewer sugar cravings, better digestion, and more stable energy. But as estrogen falls in perimenopause and menopause, your gut balance can tip over. Dysbiosis, or an unbalanced microbiome, can then worsen hormone changes and cause a cycle of discomfort.
This issue is more common than you might think. Up to 60 percent of women notice gut problems as menopause nears. By learning this link, you can take steps to strengthen your gut and support your hormones at the same time.
As estrogen and progesterone levels drop, your gut lining and bacterial mix change too. Estrogen helps keep the mucus layer in your intestines healthy and feeds good bacteria. When estrogen falls, you may notice your digestion feels more sensitive or unpredictable.
Common complaints include:
Bloating and gas as shifts in gut flora create more gas or slow things down
IBS-style cramps when stress or diet changes stir up imbalance
Constipation or loose stools depending on which bacteria groups grow too few or too many
Unexpected weight gain because gut imbalances can encourage fat storage and raise insulin resistance
Over time, ongoing dysbiosis can raise your risk for insulin resistance, heart disease, and weaker bones. That happens because your gut influences inflammation, blood sugar control, and nutrient absorption— all vital for long-term health.
The good news is your microbiome responds quickly to positive changes. By adding nourishing foods, probiotics, and mindful habits, you can begin restoring balance—and ease many menopause-related gut issues.
When your gut community shifts out of balance, it can make estrogen levels dip even further. Certain bacteria produce an enzyme called beta glucuronidase.
In a healthy gut, this enzyme reactivates just the right amount of estrogen so it can recycle back into your bloodstream. But when harmful bacteria take over, they crank out too much beta glucuronidase. That extra enzyme reactivates estrogen too early, sending it out of your body instead of back into circulation. In other words, an unhealthy microbiome can speed up estrogen loss, and lower estrogen can in turn make your gut lining and bacterial diversity suffer more.
Breaking this cycle early makes a huge difference. When you nurture good gut bugs, you help your body hold onto more of the estrogen it needs. That ease in hormone balance can soothe hot flashes, lift your energy, and calm digestive woes. Adding fiber, fermented foods, or a targeted probiotic can halt this feedback loop and set you on a clearer, calmer path through menopause.
What you put on your plate feeds more than just you. It feeds the trillions of tiny helpers in your gut. Here’s how to build a daily plate that helps your inner community grow strong:
Fiber-rich veggies: Fill half your plate with bright peppers, broccoli, leafy greens, and carrots. These plant fibers feed good bacteria and keep food moving smoothly.
Legumes and whole grains: Lentils, chickpeas, oats, and brown rice give steady energy and prebiotic food for your gut bugs.
Fermented foods add live cultures that can quickly restore your balance:
Yogurt and kefir: Enjoy a small bowl each morning or blend kefir into a smoothie.
Kimchi or sauerkraut: A few spoonfuls at lunch or dinner bring tangy crunch and a boost of good bacteria.
Prebiotic power foods tip the balance toward health:
Onions and garlic: Mince into soups, stews, or roasted veggies.
Asparagus and leeks: Steam or grill as a side.
Sample Gut Glow Recipes:
Smoothies: Blend half a cup of plain kefir with a handful of berries, a tablespoon of ground flaxseed, and a few ice cubes. This simple drink delivers probiotics, fiber, and plant nutrients in one refreshing sip. Also, don't hesitate to put some sugar (or honey) in your smoothies if it makes your drink tastier!
Chicken Soup: This nourishing soup layers tender chicken with carrots, celery, onion & garlic, cabbage, and parsley. Stir in 1 Tbsp sweet Hungarian paprika, cover with water, and bring to a boil. Lower the heat and simmer for 1–2 hours until the chicken falls apart and the broth turns a rich golden hue. Strain the liquid, shred the chicken, return the sliced carrots and your favorite noodles, then finish with a sprinkle of fresh parsley. For the full recipe, check out the Abra’s Kitchen blog!
These tasty choices help your gut community flourish, so you feel more balanced during perimenopause and beyond.
Real food is your foundation, but a well-chosen supplement can give extra support during menopause:
Lactobacillus acidophilus and L. rhamnosus (10–20 billion CFUs daily): These strains help boost your estrobolome, balance vaginal pH, and ease digestion. Take them on an empty stomach or before bed.
Prebiotic fibers (3–5 g per day): Inulin or similar fibers feed good bugs. Mix into water or sprinkle on cereal
Polyphenols: Found in green tea, berries, and cocoa, these add antioxidant protection. A cup of green tea and a handful of blueberries each day go a long way.
L-glutamine (5–10 g): This amino acid helps heal the gut lining. Stir it into a morning smoothie to calm inflammation and improve nutrient use.
Pair these allies with a varied diet and gentle movement so your gut and hormones work together. That way, you can move through menopause with more ease and balance.
If you want to understand more about supplements before adding it to your routine, go to our Gut & Digestion section, or click here.
Your daily habits shape more than your mood and energy - they help cultivate a healthy gut community. Stress and sleep play a crucial role. When cortisol runs high, it can cut down friendly bacteria and stir up inflammation.
Try a simple wind-down ritual each night: dim the lights, take three deep breaths, and sip a cup of herbal tea before bed. Aim for seven to eight hours of rest so your gut has time to recharge.
Movement also keeps things flowing. A gentle walk after dinner, a morning yoga stretch, or a few minutes of Qi Gong can boost gut motility and encourage microbial diversity. You need consistency, because a marathon wouldn't work.
Finally, honor the mind-body connection at mealtimes. Slow down, chew each bite thoroughly, and pause between mouthfuls. When you savor each flavor and listen to your body’s signals of fullness, you support digestion and give your gut a chance to welcome all those beneficial microbes.
"Can antibiotics ruin my gut for menopause?"
Antibiotics kill both bad and good bacteria. If you must take them, pair the course with a probiotic to help rebuild balance afterward.
"Do I need to cycle probiotics or take them daily?"
Taking a probiotic each day gives steady support, especially during hormonal shifts. You can pause now and then, but regular use helps keep your good bacteria strong.
"Will a low-FODMAP diet help or hurt in menopause?"
A low-FODMAP plan can ease bloating for some, but it may cut out prebiotic fibers that feed healthy bacteria. Try it for a short time and slowly add foods back to see what works for you.
Have questions on your mind? Feel free to leave a comment or send us an email. We’re here for you as you step into this new chapter.
If gut troubles - like ongoing IBS, sudden weight changes, or severe bloating - persist despite diet and habit changes, it’s time for a pro’s help. A gastroenterologist can run simple stool tests to check for imbalance or inflammation. If your gut issues come with other menopause symptoms, a menopause-trained provider can check your hormones and help you build a full care plan.
Your gut and your hormones work together. Care for one to support the other, and you will see better digestion, more energy, and improved well-being. For a first step, add a serving of fermented food each day or pick a high-quality women’s probiotic.
Ready to learn more? Share your story and join the Women40Wellness community. Together, we will move through menopause with balance, strength, and confidence.
1. Brighten, Jolene. “Connection between Gut Health, Menopause, and Perimenopause.” Dr. Jolene Brighten, 30 Sept. 2022, drbrighten.com/gut-health-menopause-and-perimenopause/.
2. Pappa, Abra. “Homemade Nourishing Chicken Soup from Scratch! (Using a Whole Chicken).” Abra’s Kitchen, 8 Nov. 2021, abraskitchen.com/homemade-nourishing-chicken-soup-from-scratch-using-a-whole-chicken/.
Medically reviewed by Clair Johnson, Hormone & Nutrition Coach